IL_5O61_167

3D structure

PDB id

5O61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The complete structure of the Mycobacterium smegmatis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.31 Å

Loop

Sequence

GG*CAC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5O61_167 not in the Motif Atlas

Homologous match to IL_4LFB_038

Geometric discrepancy: 0.1544

The information below is about IL_4LFB_038

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_34520.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

61

Unit IDs

5O61|1|BA|G|935
5O61|1|BA|G|936
*
5O61|1|BA|C|1207
5O61|1|BA|A|1208
5O61|1|BA|C|1209

Current chains

Chain BA

16S rRNA

Nearby chains

Chain BM

30S ribosomal protein S13

Chain BS

30S ribosomal protein S19

Chain BW

Transfer RNA; tRNA