IL_5O61_179

3D structure

PDB id

5O61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The complete structure of the Mycobacterium smegmatis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.31 Å

Loop

Sequence

GCUG*CGAAUC

Length

10 nucleotides

Bulged bases

5O61|1|BA|U|1238, 5O61|1|BA|A|1261, 5O61|1|BA|U|1262

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5O61_179 not in the Motif Atlas

Homologous match to IL_4LFB_052

Geometric discrepancy: 0.1508

The information below is about IL_4LFB_052

Detailed Annotation

180 degree turn

Broad Annotation

No text annotation

Motif group

IL_11344.2

Basepair signature

cWW-cSS-L-cWW

Number of instances in this motif group

2

Unit IDs

5O61|1|BA|G|1236
5O61|1|BA|C|1237
5O61|1|BA|U|1238
5O61|1|BA|G|1239
*
5O61|1|BA|C|1258
5O61|1|BA|G|1259
5O61|1|BA|A|1260
5O61|1|BA|A|1261
5O61|1|BA|U|1262
5O61|1|BA|C|1263

Current chains

Chain BA

16S rRNA

Nearby chains

Chain BC

30S ribosomal protein S3

Chain BJ

30S ribosomal protein S10

Chain BN

30S ribosomal protein S14 type Z