IL_5O61_182

3D structure

PDB id

5O61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The complete structure of the Mycobacterium smegmatis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.31 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

5O61|1|BA|C|1383, 5O61|1|BA|A|1487

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5O61_182 not in the Motif Atlas

Homologous match to IL_4LFB_056

Geometric discrepancy: 0.1704

The information below is about IL_4LFB_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

4

Unit IDs

5O61|1|BA|C|1382
5O61|1|BA|C|1383
5O61|1|BA|G|1384
*
5O61|1|BA|C|1485
5O61|1|BA|A|1486
5O61|1|BA|A|1487
5O61|1|BA|G|1488

Current chains

Chain BA

16S rRNA

Nearby chains

Chain BB

Conserved domain protein

Chain BW

Transfer RNA; tRNA

Chain BX

mRNA fragment