3D structure

PDB id
5O61 (explore in PDB, NAKB, or RNA 3D Hub)
Description
The complete structure of the Mycobacterium smegmatis 70S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.31 Å

Loop

Sequence
CCG*CAAG
Length
7 nucleotides
Bulged bases
5O61|1|BA|C|1383, 5O61|1|BA|A|1487
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5O61_182 not in the Motif Atlas
Homologous match to IL_4LFB_056
Geometric discrepancy: 0.1704
The information below is about IL_4LFB_056
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_61438.4
Basepair signature
cWW-L-cWW
Number of instances in this motif group
4

Unit IDs

5O61|1|BA|C|1382
5O61|1|BA|C|1383
5O61|1|BA|G|1384
*
5O61|1|BA|C|1485
5O61|1|BA|A|1486
5O61|1|BA|A|1487
5O61|1|BA|G|1488

Current chains

Chain BA
16S rRNA

Nearby chains

Chain BB
Conserved domain protein
Chain BW
Transfer RNA; tRNA
Chain BX
mRNA fragment

Coloring options:


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