IL_5O61_188
3D structure
- PDB id
- 5O61 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The complete structure of the Mycobacterium smegmatis 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.31 Å
Loop
- Sequence
- GUAAC*GGGAU
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5O61_188 not in the Motif Atlas
- Geometric match to IL_8D29_010
- Geometric discrepancy: 0.1989
- The information below is about IL_8D29_010
- Detailed Annotation
- Partly complementary
- Broad Annotation
- Partly complementary
- Motif group
- IL_71154.3
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 17
Unit IDs
5O61|1|BA|G|1406
5O61|1|BA|U|1407
5O61|1|BA|A|1408
5O61|1|BA|A|1409
5O61|1|BA|C|1410
*
5O61|1|BA|G|1457
5O61|1|BA|G|1458
5O61|1|BA|G|1459
5O61|1|BA|A|1460
5O61|1|BA|U|1461
Current chains
- Chain BA
- 16S rRNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain L
- 50S ribosomal protein L14
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