IL_5OA3_021

3D structure

PDB id

5OA3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 40S-eIF2D-re-initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

UAUCAA*UGACCACG

Length

14 nucleotides

Bulged bases

5OA3|1|2|U|361, 5OA3|1|2|C|399

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5OA3_021 not in the Motif Atlas

Homologous match to IL_4V88_402

Geometric discrepancy: 0.1107

The information below is about IL_4V88_402

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_45067.5

Basepair signature

cWW-tSH-tSS-tHS-R-cWW-cWW-R

Number of instances in this motif group

16

Unit IDs

5OA3|1|2|U|359
5OA3|1|2|A|360
5OA3|1|2|U|361
5OA3|1|2|C|362
5OA3|1|2|A|363
5OA3|1|2|A|364
*
5OA3|1|2|U|396
5OA3|1|2|G|397
5OA3|1|2|A|398
5OA3|1|2|C|399
5OA3|1|2|C|400
5OA3|1|2|A|401
5OA3|1|2|C|402
5OA3|1|2|G|403

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain I

40S ribosomal protein S8

Chain L

40S ribosomal protein S11

Chain X

40S ribosomal protein S23