IL_5OA3_027

3D structure

PDB id

5OA3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 40S-eIF2D-re-initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

CCACUC*GGAG

Length

10 nucleotides

Bulged bases

5OA3|1|2|G|507

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5OA3_027 not in the Motif Atlas

Homologous match to IL_4V88_408

Geometric discrepancy: 0.1013

The information below is about IL_4V88_408

Detailed Annotation

C-loop with extra cWW pair

Broad Annotation

C-loop

Motif group

IL_11347.2

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

3

Unit IDs

5OA3|1|2|C|491
5OA3|1|2|C|492
5OA3|1|2|A|493
5OA3|1|2|C|494
5OA3|1|2|U|495
5OA3|1|2|C|496
*
5OA3|1|2|G|506
5OA3|1|2|G|507
5OA3|1|2|A|508
5OA3|1|2|G|509

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain E

40S ribosomal protein S4, X isoform

Chain J

40S ribosomal protein S9

Chain Y

40S ribosomal protein S24