IL_5OA3_034

3D structure

PDB id

5OA3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 40S-eIF2D-re-initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

GUGCCAG*CGGUAAUUC

Length

16 nucleotides

Bulged bases

5OA3|1|2|A|628, 5OA3|1|2|U|630, 5OA3|1|2|U|631

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5OA3_034 not in the Motif Atlas

Homologous match to IL_4V88_415

Geometric discrepancy: 0.1243

The information below is about IL_4V88_415

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.1

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

5OA3|1|2|G|611
5OA3|1|2|U|612
5OA3|1|2|G|613
5OA3|1|2|C|614
5OA3|1|2|C|615
5OA3|1|2|A|616
5OA3|1|2|G|617
*
5OA3|1|2|C|624
5OA3|1|2|G|625
5OA3|1|2|G|626
5OA3|1|2|U|627
5OA3|1|2|A|628
5OA3|1|2|A|629
5OA3|1|2|U|630
5OA3|1|2|U|631
5OA3|1|2|C|632

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain D

40S ribosomal protein S3

Chain X

40S ribosomal protein S23

Chain e

40S ribosomal protein S30