IL_5OA3_060
3D structure
- PDB id
- 5OA3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human 40S-eIF2D-re-initiation complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.2 Å
Loop
- Sequence
- ACCA*UCCCU
- Length
- 9 nucleotides
- Bulged bases
- 5OA3|1|2|C|1215, 5OA3|1|2|C|1216
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5OA3_060 not in the Motif Atlas
- Homologous match to IL_4V88_443
- Geometric discrepancy: 0.1675
- The information below is about IL_4V88_443
- Detailed Annotation
- C-loop
- Broad Annotation
- No text annotation
- Motif group
- IL_63596.9
- Basepair signature
- cWW-cWS-cHS-L-cWW-tWH
- Number of instances in this motif group
- 15
Unit IDs
5OA3|1|2|A|1214
5OA3|1|2|C|1215
5OA3|1|2|C|1216
5OA3|1|2|A|1217
*
5OA3|1|2|U|1681
5OA3|1|2|C|1682
5OA3|1|2|C|1683
5OA3|1|2|C|1684
5OA3|1|2|U|1685
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain 1
- Transfer RNA; tRNA
- Chain F
- 40S ribosomal protein S5
- Chain Q
- 40S ribosomal protein S16
- Chain U
- 40S ribosomal protein S20
- Chain a
- 40S ribosomal protein S26
- Chain c
- 40S ribosomal protein S28
Coloring options: