IL_5OA3_068
3D structure
- PDB id
- 5OA3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human 40S-eIF2D-re-initiation complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.2 Å
Loop
- Sequence
- UGCAUGG*UCUGUGAUG
- Length
- 16 nucleotides
- Bulged bases
- 5OA3|1|2|C|1331, 5OA3|1|2|U|1494, 5OA3|1|2|G|1497
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5OA3_068 not in the Motif Atlas
- Homologous match to IL_8P9A_439
- Geometric discrepancy: 0.1719
- The information below is about IL_8P9A_439
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_86012.1
- Basepair signature
- cWW-tHS-tWH-cWH-cWW-L-L-cWW
- Number of instances in this motif group
- 1
Unit IDs
5OA3|1|2|U|1329
5OA3|1|2|G|1330
5OA3|1|2|C|1331
5OA3|1|2|A|1332
5OA3|1|2|U|1333
5OA3|1|2|G|1334
5OA3|1|2|G|1335
*
5OA3|1|2|U|1492
5OA3|1|2|C|1493
5OA3|1|2|U|1494
5OA3|1|2|G|1495
5OA3|1|2|U|1496
5OA3|1|2|G|1497
5OA3|1|2|A|1498
5OA3|1|2|U|1499
5OA3|1|2|G|1500
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain D
- 40S ribosomal protein S3
- Chain K
- 40S ribosomal protein S10
- Chain U
- 40S ribosomal protein S20
- Chain d
- 40S ribosomal protein S29
- Chain f
- Ribosomal protein S27a
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