IL_5ON6_115
3D structure
- PDB id
- 5ON6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of haemanthamine bound to the 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- CUUAGUAC*GGAACAG
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5ON6_115 not in the Motif Atlas
- Homologous match to IL_5TBW_116
- Geometric discrepancy: 0.0372
- The information below is about IL_5TBW_116
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.8
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
5ON6|1|1|C|3018
5ON6|1|1|U|3019
5ON6|1|1|U|3020
5ON6|1|1|A|3021
5ON6|1|1|G|3022
5ON6|1|1|U|3023
5ON6|1|1|A|3024
5ON6|1|1|C|3025
*
5ON6|1|1|G|3030
5ON6|1|1|G|3031
5ON6|1|1|A|3032
5ON6|1|1|A|3033
5ON6|1|1|C|3034
5ON6|1|1|A|3035
5ON6|1|1|G|3036
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain AN
- Ubiquitin-60S ribosomal protein L40
- Chain k
- 60S ribosomal protein L3
- Chain lR
- 60S ribosomal protein L23-A
- Chain q
- 60S ribosomal protein L9-A
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