IL_5ON6_116

3D structure

PDB id

5ON6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of haemanthamine bound to the 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UAAUU*ACCA

Length

9 nucleotides

Bulged bases

5ON6|1|1|C|3092

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5ON6_116 not in the Motif Atlas

Homologous match to IL_5TBW_117

Geometric discrepancy: 0.0491

The information below is about IL_5TBW_117

Detailed Annotation

Major groove minor groove platform with tHH

Broad Annotation

No text annotation

Motif group

IL_14592.1

Basepair signature

cWW-tHH-cWW-L-L

Number of instances in this motif group

4

Unit IDs

5ON6|1|1|U|3047
5ON6|1|1|A|3048
5ON6|1|1|A|3049
5ON6|1|1|U|3050
5ON6|1|1|U|3051
*
5ON6|1|1|A|3091
5ON6|1|1|C|3092
5ON6|1|1|C|3093
5ON6|1|1|A|3094

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain 7

60S ribosomal protein L24-A

Chain k

60S ribosomal protein L3

Chain lR

60S ribosomal protein L23-A