IL_5ON6_177

3D structure

PDB id

5ON6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of haemanthamine bound to the 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GUUAAAA*UC

Length

9 nucleotides

Bulged bases

5ON6|1|6|A|619

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5ON6_177 not in the Motif Atlas

Homologous match to IL_4V88_416

Geometric discrepancy: 0.0599

The information below is about IL_4V88_416

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.3

Basepair signature

cWW-L-cWW-R-L-R

Number of instances in this motif group

5

Unit IDs

5ON6|1|6|G|616
5ON6|1|6|U|617
5ON6|1|6|U|618
5ON6|1|6|A|619
5ON6|1|6|A|620
5ON6|1|6|A|621
5ON6|1|6|A|622
*
5ON6|1|6|U|1104
5ON6|1|6|C|1105

Current chains

Chain 6

18S ribosomal RNA

Nearby chains

Chain d3

40S ribosomal protein S23-A

Chain d6

40S ribosomal protein S26-B