IL_5ON6_253
3D structure
- PDB id
- 5ON6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of haemanthamine bound to the 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- UAUCAA*UUUCAACG
- Length
- 14 nucleotides
- Bulged bases
- 5ON6|1|A|U|313, 5ON6|1|A|C|351
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5ON6_253 not in the Motif Atlas
- Geometric match to IL_4V88_402
- Geometric discrepancy: 0.052
- The information below is about IL_4V88_402
- Detailed Annotation
- Kink-turn with non-sequential stacking
- Broad Annotation
- Kink-turn
- Motif group
- IL_45067.5
- Basepair signature
- cWW-tSH-tSS-tHS-R-cWW-cWW-R
- Number of instances in this motif group
- 16
Unit IDs
5ON6|1|A|U|311
5ON6|1|A|A|312
5ON6|1|A|U|313
5ON6|1|A|C|314
5ON6|1|A|A|315
5ON6|1|A|A|316
*
5ON6|1|A|U|348
5ON6|1|A|U|349
5ON6|1|A|U|350
5ON6|1|A|C|351
5ON6|1|A|A|352
5ON6|1|A|A|353
5ON6|1|A|C|354
5ON6|1|A|G|355
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain J
- 40S ribosomal protein S8-A
- Chain M
- 40S ribosomal protein S11-A
- Chain Y
- 40S ribosomal protein S23-A
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