IL_5ON6_289

3D structure

PDB id

5ON6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of haemanthamine bound to the 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CACCA*UCCCUG

Length

11 nucleotides

Bulged bases

5ON6|1|A|C|1158, 5ON6|1|A|C|1159

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5ON6_289 not in the Motif Atlas

Geometric match to IL_4V88_408

Geometric discrepancy: 0.3756

The information below is about IL_4V88_408

Detailed Annotation

C-loop with extra cWW pair

Broad Annotation

C-loop

Motif group

IL_11347.2

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

3

Unit IDs

5ON6|1|A|C|1156
5ON6|1|A|A|1157
5ON6|1|A|C|1158
5ON6|1|A|C|1159
5ON6|1|A|A|1160
*
5ON6|1|A|U|1617
5ON6|1|A|C|1618
5ON6|1|A|C|1619
5ON6|1|A|C|1620
5ON6|1|A|U|1621
5ON6|1|A|G|1622

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain G

40S ribosomal protein S5

Chain R

40S ribosomal protein S16-A

Chain d

40S ribosomal protein S28-A