IL_5ON6_477

3D structure

PDB id

5ON6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of haemanthamine bound to the 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CCACAC*GCGUGG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5ON6_477 not in the Motif Atlas

Geometric match to IL_4EYA_005

Geometric discrepancy: 0.3776

The information below is about IL_4EYA_005

Detailed Annotation

Tandem non-canonical cWW pairs with near WC pairs

Broad Annotation

Tandem non-canonical cWW pairs with near WC pairs

Motif group

IL_82292.2

Basepair signature

cWW-L-R-L-R-L-R-L-R-cWW

Number of instances in this motif group

3

Unit IDs

5ON6|1|1|C|3161
5ON6|1|1|C|3162
5ON6|1|1|A|3163
5ON6|1|1|C|3164
5ON6|1|1|A|3165
5ON6|1|1|C|3166
*
5ON6|1|1|G|3284
5ON6|1|1|C|3285
5ON6|1|1|G|3286
5ON6|1|1|U|3287
5ON6|1|1|G|3288
5ON6|1|1|G|3289

Current chains

Chain 1

25S ribosomal RNA

Nearby chains