IL_5ON6_484

3D structure

PDB id

5ON6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of haemanthamine bound to the 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGGU*ACGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5ON6_484 not in the Motif Atlas

Geometric match to IL_8C3A_438

Geometric discrepancy: 0.241

The information below is about IL_8C3A_438

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_54697.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

51

Unit IDs

5ON6|1|A|C|646
5ON6|1|A|G|647
5ON6|1|A|G|648
5ON6|1|A|U|649
*
5ON6|1|A|A|685
5ON6|1|A|C|686
5ON6|1|A|G|687
5ON6|1|A|G|688

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain X

40S ribosomal protein S22-A