IL_5OOM_008

3D structure

PDB id

5OOM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a native assembly intermediate of the human mitochondrial ribosome with unfolded interfacial rRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.03 Å

Loop

Sequence

GAAAC*GUGAUAGC

Length

13 nucleotides

Bulged bases

5OOM|1|A|G|2011, 5OOM|1|A|G|2015

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5OOM_008 not in the Motif Atlas

Geometric match to IL_7RQB_018

Geometric discrepancy: 0.154

The information below is about IL_7RQB_018

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_17470.6

Basepair signature

cWW-tWW-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

5OOM|1|A|G|1906
5OOM|1|A|A|1907
5OOM|1|A|A|1908
5OOM|1|A|A|1909
5OOM|1|A|C|1910
*
5OOM|1|A|G|2009
5OOM|1|A|U|2010
5OOM|1|A|G|2011
5OOM|1|A|A|2012
5OOM|1|A|U|2013
5OOM|1|A|A|2014
5OOM|1|A|G|2015
5OOM|1|A|C|2016

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain F

39S ribosomal protein L4, mitochondrial

Chain M

39S ribosomal protein L15, mitochondrial

Chain i

39S ribosomal protein L51, mitochondrial