IL_5OOM_016
3D structure
- PDB id
- 5OOM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a native assembly intermediate of the human mitochondrial ribosome with unfolded interfacial rRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.03 Å
Loop
- Sequence
- GUAAA*UGAAC
- Length
- 10 nucleotides
- Bulged bases
- 5OOM|1|A|A|2251
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5OOM_016 not in the Motif Atlas
- Homologous match to IL_7RQB_036
- Geometric discrepancy: 0.0732
- The information below is about IL_7RQB_036
- Detailed Annotation
- UAA/GAN
- Broad Annotation
- No text annotation
- Motif group
- IL_89002.2
- Basepair signature
- cWW-tWH-L-tHS-cWW
- Number of instances in this motif group
- 20
Unit IDs
5OOM|1|A|G|2149
5OOM|1|A|U|2150
5OOM|1|A|A|2151
5OOM|1|A|A|2152
5OOM|1|A|A|2153
*
5OOM|1|A|U|2248
5OOM|1|A|G|2249
5OOM|1|A|A|2250
5OOM|1|A|A|2251
5OOM|1|A|C|2252
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain I
- 39S ribosomal protein L10, mitochondrial
- Chain R
- 39S ribosomal protein L20, mitochondrial
- Chain S
- 39S ribosomal protein L21, mitochondrial
- Chain Z
- 39S ribosomal protein L30, mitochondrial
- Chain j
- 39S ribosomal protein L52, mitochondrial
- Chain o
- Ribosomal protein 63, mitochondrial
Coloring options: