IL_5OOM_024

3D structure

PDB id

5OOM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a native assembly intermediate of the human mitochondrial ribosome with unfolded interfacial rRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.03 Å

Loop

Sequence

GGAA*UC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5OOM_024 not in the Motif Atlas

Homologous match to IL_7RQB_066

Geometric discrepancy: 0.1019

The information below is about IL_7RQB_066

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

Major groove platform

Motif group

IL_50694.2

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

27

Unit IDs

5OOM|1|A|G|2470
5OOM|1|A|G|2471
5OOM|1|A|A|2472
5OOM|1|A|A|2473
*
5OOM|1|A|U|2656
5OOM|1|A|C|2657

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain L

39S ribosomal protein L14, mitochondrial

Chain Q

39S ribosomal protein L19, mitochondrial