IL_5OOM_028

3D structure

PDB id

5OOM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a native assembly intermediate of the human mitochondrial ribosome with unfolded interfacial rRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.03 Å

Loop

Sequence

GA*UACC

Length

6 nucleotides

Bulged bases

5OOM|1|A|A|2926

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5OOM_028 not in the Motif Atlas

Homologous match to IL_4WF9_081

Geometric discrepancy: 0.2268

The information below is about IL_4WF9_081

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_34520.4

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

68

Unit IDs

5OOM|1|A|G|2733
5OOM|1|A|A|2734
*
5OOM|1|A|U|2925
5OOM|1|A|A|2926
5OOM|1|A|C|2927
5OOM|1|A|C|2928

Current chains

Chain A

16S ribosomal RNA

Nearby chains