IL_5OOM_033

3D structure

PDB id

5OOM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a native assembly intermediate of the human mitochondrial ribosome with unfolded interfacial rRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.03 Å

Loop

Sequence

CCCUGUAC*GGACAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5OOM_033 not in the Motif Atlas

Geometric match to IL_1JBR_001

Geometric discrepancy: 0.2957

The information below is about IL_1JBR_001

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_62167.4

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

16

Unit IDs

5OOM|1|A|C|3119
5OOM|1|A|C|3120
5OOM|1|A|C|3121
5OOM|1|A|U|3122
5OOM|1|A|G|3123
5OOM|1|A|U|3124
5OOM|1|A|A|3125
5OOM|1|A|C|3126
*
5OOM|1|A|G|3131
5OOM|1|A|G|3132
5OOM|1|A|A|3133
5OOM|1|A|C|3134
5OOM|1|A|A|3135
5OOM|1|A|A|3136
5OOM|1|A|G|3137

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain E

39S ribosomal protein L3, mitochondrial

Chain L

39S ribosomal protein L14, mitochondrial

Chain u

Mitochondrial assembly of ribosomal large subunit protein 1