IL_5OPT_015
3D structure
- PDB id
- 5OPT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of KSRP in context of Trypanosoma cruzi 40S
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- UAUCAG*CGUUGACG
- Length
- 14 nucleotides
- Bulged bases
- 5OPT|1|E|U|361, 5OPT|1|E|U|399
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5OPT_015 not in the Motif Atlas
- Homologous match to IL_4V88_402
- Geometric discrepancy: 0.1509
- The information below is about IL_4V88_402
- Detailed Annotation
- Kink-turn with non-sequential stacking
- Broad Annotation
- Kink-turn
- Motif group
- IL_45067.5
- Basepair signature
- cWW-tSH-tSS-tHS-R-cWW-cWW-R
- Number of instances in this motif group
- 16
Unit IDs
5OPT|1|E|U|359
5OPT|1|E|A|360
5OPT|1|E|U|361
5OPT|1|E|C|362
5OPT|1|E|A|363
5OPT|1|E|G|364
*
5OPT|1|E|C|396
5OPT|1|E|G|397
5OPT|1|E|U|398
5OPT|1|E|U|399
5OPT|1|E|G|400
5OPT|1|E|A|401
5OPT|1|E|C|402
5OPT|1|E|G|403
Current chains
- Chain E
- 18S rRNA
Nearby chains
- Chain M
- 40S ribosomal protein S23, putative
- Chain X
- 40S ribosomal protein S11, putative
- Chain Z
- 40S ribosomal protein S8
Coloring options: