IL_5OPT_028

3D structure

PDB id

5OPT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of KSRP in context of Trypanosoma cruzi 40S

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GUGCCAG*CGGUAAUUC

Length

16 nucleotides

Bulged bases

5OPT|1|E|A|633, 5OPT|1|E|U|635, 5OPT|1|E|U|636

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5OPT_028 not in the Motif Atlas

Homologous match to IL_4V88_415

Geometric discrepancy: 0.1603

The information below is about IL_4V88_415

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.1

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

5OPT|1|E|G|616
5OPT|1|E|U|617
5OPT|1|E|G|618
5OPT|1|E|C|619
5OPT|1|E|C|620
5OPT|1|E|A|621
5OPT|1|E|G|622
*
5OPT|1|E|C|629
5OPT|1|E|G|630
5OPT|1|E|G|631
5OPT|1|E|U|632
5OPT|1|E|A|633
5OPT|1|E|A|634
5OPT|1|E|U|635
5OPT|1|E|U|636
5OPT|1|E|C|637

Current chains

Chain E

18S rRNA

Nearby chains

Chain M

40S ribosomal protein S23, putative

Chain c

40S ribosomal protein S30

Chain m

40S ribosomal protein S3, putative