IL_5OPT_029

3D structure

PDB id

5OPT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of KSRP in context of Trypanosoma cruzi 40S

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GUUAAAG*UC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5OPT_029 not in the Motif Atlas

Homologous match to IL_4V88_416

Geometric discrepancy: 0.1775

The information below is about IL_4V88_416

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.3

Basepair signature

cWW-L-cWW-R-L-R

Number of instances in this motif group

5

Unit IDs

5OPT|1|E|G|670
5OPT|1|E|U|671
5OPT|1|E|U|672
5OPT|1|E|A|673
5OPT|1|E|A|674
5OPT|1|E|A|675
5OPT|1|E|G|676
*
5OPT|1|E|U|1572
5OPT|1|E|C|1573

Current chains

Chain E

18S rRNA

Nearby chains

Chain M

40S ribosomal protein S23, putative

Chain T

40S ribosomal protein S26

Chain d

40S ribosomal protein S2, putative