IL_5OPT_030
3D structure
- PDB id
- 5OPT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of KSRP in context of Trypanosoma cruzi 40S
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- CGUAG*UCAAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5OPT_030 not in the Motif Atlas
- Homologous match to IL_4V88_418
- Geometric discrepancy: 0.1179
- The information below is about IL_4V88_418
- Detailed Annotation
- tSH-tHW-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_17136.4
- Basepair signature
- cWW-R-L-tHS-tHW-cWW
- Number of instances in this motif group
- 18
Unit IDs
5OPT|1|E|C|681
5OPT|1|E|G|682
5OPT|1|E|U|683
5OPT|1|E|A|684
5OPT|1|E|G|685
*
5OPT|1|E|U|1303
5OPT|1|E|C|1304
5OPT|1|E|A|1305
5OPT|1|E|A|1306
5OPT|1|E|G|1307
Current chains
- Chain E
- 18S rRNA
Nearby chains
- Chain M
- 40S ribosomal protein S23, putative
- Chain R
- 40S ribosomal protein S13, putative
- Chain X
- 40S ribosomal protein S11, putative
- Chain e
- 40S ribosomal protein S15a, putative
Coloring options: