IL_5OPT_045

3D structure

PDB id

5OPT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of KSRP in context of Trypanosoma cruzi 40S

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

AGUUC*GGAU

Length

9 nucleotides

Bulged bases

5OPT|1|E|U|1207

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5OPT_045 not in the Motif Atlas

Geometric match to IL_4V88_430

Geometric discrepancy: 0.19

The information below is about IL_4V88_430

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

5OPT|1|E|A|1205
5OPT|1|E|G|1206
5OPT|1|E|U|1207
5OPT|1|E|U|1208
5OPT|1|E|C|1209
*
5OPT|1|E|G|1288
5OPT|1|E|G|1289
5OPT|1|E|A|1290
5OPT|1|E|U|1291

Current chains

Chain E

18S rRNA

Nearby chains

Chain R

40S ribosomal protein S13, putative

Chain S

40S ribosomal protein S27, putative

Chain W

40S ribosomal protein S3a-2