IL_5OPT_046

3D structure

PDB id

5OPT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of KSRP in context of Trypanosoma cruzi 40S

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CGGGG*CAAG

Length

9 nucleotides

Bulged bases

5OPT|1|E|G|1211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5OPT_046 not in the Motif Atlas

Homologous match to IL_4V88_431

Geometric discrepancy: 0.146

The information below is about IL_4V88_431

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

5OPT|1|E|C|1209
5OPT|1|E|G|1210
5OPT|1|E|G|1211
5OPT|1|E|G|1212
5OPT|1|E|G|1213
*
5OPT|1|E|C|1285
5OPT|1|E|A|1286
5OPT|1|E|A|1287
5OPT|1|E|G|1288

Current chains

Chain E

18S rRNA

Nearby chains

Chain R

40S ribosomal protein S13, putative

Chain T

40S ribosomal protein S26

Chain W

40S ribosomal protein S3a-2