IL_5OPT_050

3D structure

PDB id

5OPT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of KSRP in context of Trypanosoma cruzi 40S

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CGAAG*UGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5OPT_050 not in the Motif Atlas

Homologous match to IL_4V88_436

Geometric discrepancy: 0.1634

The information below is about IL_4V88_436

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.4

Basepair signature

cWW-R-L-tHS-tHW-cWW

Number of instances in this motif group

18

Unit IDs

5OPT|1|E|C|1325
5OPT|1|E|G|1326
5OPT|1|E|A|1327
5OPT|1|E|A|1328
5OPT|1|E|G|1329
*
5OPT|1|E|U|1345
5OPT|1|E|G|1346
5OPT|1|E|U|1347
5OPT|1|E|A|1348
5OPT|1|E|G|1349

Current chains

Chain E

18S rRNA

Nearby chains

Chain T

40S ribosomal protein S26

Chain V

40S ribosomal protein S14, putative