IL_5OPT_057
3D structure
- PDB id
- 5OPT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of KSRP in context of Trypanosoma cruzi 40S
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- ACCA*UCCCU
- Length
- 9 nucleotides
- Bulged bases
- 5OPT|1|E|C|1626, 5OPT|1|E|C|1627
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5OPT_057 not in the Motif Atlas
- Homologous match to IL_4V88_443
- Geometric discrepancy: 0.4071
- The information below is about IL_4V88_443
- Detailed Annotation
- C-loop
- Broad Annotation
- No text annotation
- Motif group
- IL_63596.9
- Basepair signature
- cWW-cWS-cHS-L-cWW-tWH
- Number of instances in this motif group
- 15
Unit IDs
5OPT|1|E|A|1625
5OPT|1|E|C|1626
5OPT|1|E|C|1627
5OPT|1|E|A|1628
*
5OPT|1|E|U|2151
5OPT|1|E|C|2152
5OPT|1|E|C|2153
5OPT|1|E|C|2154
5OPT|1|E|U|2155
Current chains
- Chain E
- 18S rRNA
Nearby chains
- Chain O
- 40S ribosomal protein S5, putative
- Chain U
- 40S ribosomal protein S33, putative
- Chain r
- 40S ribosomal protein S16, putative
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