IL_5OPT_061
3D structure
- PDB id
- 5OPT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of KSRP in context of Trypanosoma cruzi 40S
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- UGCAUGG*UCUGUGAUG
- Length
- 16 nucleotides
- Bulged bases
- 5OPT|1|E|C|1742, 5OPT|1|E|U|1947, 5OPT|1|E|G|1950
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5OPT_061 not in the Motif Atlas
- Homologous match to IL_8P9A_439
- Geometric discrepancy: 0.2066
- The information below is about IL_8P9A_439
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_99893.1
- Basepair signature
- cWW-tHS-tWH-cWH-cWW-L-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
5OPT|1|E|U|1740
5OPT|1|E|G|1741
5OPT|1|E|C|1742
5OPT|1|E|A|1743
5OPT|1|E|U|1744
5OPT|1|E|G|1745
5OPT|1|E|G|1746
*
5OPT|1|E|U|1945
5OPT|1|E|C|1946
5OPT|1|E|U|1947
5OPT|1|E|G|1948
5OPT|1|E|U|1949
5OPT|1|E|G|1950
5OPT|1|E|A|1951
5OPT|1|E|U|1952
5OPT|1|E|G|1953
Current chains
- Chain E
- 18S rRNA
Nearby chains
- Chain c
- 40S ribosomal protein S30
- Chain l
- Ribosomal protein S20, putative
- Chain m
- 40S ribosomal protein S3, putative
- Chain n
- 40S ribosomal protein S10, putative
- Chain q
- Ribosomal protein S29, putative
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