IL_5OPT_082

3D structure

PDB id

5OPT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of KSRP in context of Trypanosoma cruzi 40S

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

AGCC*GUUUU

Length

9 nucleotides

Bulged bases

5OPT|1|E|U|557

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5OPT_082 not in the Motif Atlas

Geometric match to IL_1JID_002

Geometric discrepancy: 0.3061

The information below is about IL_1JID_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

5OPT|1|E|A|531
5OPT|1|E|G|532
5OPT|1|E|C|533
5OPT|1|E|C|534
*
5OPT|1|E|G|555
5OPT|1|E|U|556
5OPT|1|E|U|557
5OPT|1|E|U|558
5OPT|1|E|U|559

Current chains

Chain E

18S rRNA

Nearby chains

Chain b

40S ribosomal protein S9, putative

Chain c

40S ribosomal protein S30