IL_5OPT_083

3D structure

PDB id

5OPT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of KSRP in context of Trypanosoma cruzi 40S

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CUCUAA*UUGUG

Length

11 nucleotides

Bulged bases

5OPT|1|E|U|702

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5OPT_083 not in the Motif Atlas

Geometric match to IL_5BTM_001

Geometric discrepancy: 0.2882

The information below is about IL_5BTM_001

Detailed Annotation

Triple non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71154.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

17

Unit IDs

5OPT|1|E|C|699
5OPT|1|E|U|700
5OPT|1|E|C|701
5OPT|1|E|U|702
5OPT|1|E|A|703
5OPT|1|E|A|704
*
5OPT|1|E|U|752
5OPT|1|E|U|753
5OPT|1|E|G|754
5OPT|1|E|U|755
5OPT|1|E|G|756

Current chains

Chain E

18S rRNA

Nearby chains

Chain Q

Ribosomal protein S7, putative