IL_5OPT_087
3D structure
- PDB id
- 5OPT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of KSRP in context of Trypanosoma cruzi 40S
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- GGGCAG*CGGCAUC
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5OPT_087 not in the Motif Atlas
- Geometric match to IL_4EYA_005
- Geometric discrepancy: 0.3984
- The information below is about IL_4EYA_005
- Detailed Annotation
- Tandem non-canonical cWW pairs with near WC pairs
- Broad Annotation
- Tandem non-canonical cWW pairs with near WC pairs
- Motif group
- IL_82292.2
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-cWW
- Number of instances in this motif group
- 3
Unit IDs
5OPT|1|E|G|980
5OPT|1|E|G|981
5OPT|1|E|G|982
5OPT|1|E|C|983
5OPT|1|E|A|984
5OPT|1|E|G|985
*
5OPT|1|E|C|1181
5OPT|1|E|G|1182
5OPT|1|E|G|1183
5OPT|1|E|C|1184
5OPT|1|E|A|1185
5OPT|1|E|U|1186
5OPT|1|E|C|1187
Current chains
- Chain E
- 18S rRNA
Nearby chains
- Chain Q
- Ribosomal protein S7, putative
- Chain R
- 40S ribosomal protein S13, putative
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