IL_5OQL_059

3D structure

PDB id

5OQL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome from Chaetomium thermophilum

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGUAG*UCAGG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5OQL_059 not in the Motif Atlas

Homologous match to IL_4V88_418

Geometric discrepancy: 0.2283

The information below is about IL_4V88_418

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.4

Basepair signature

cWW-R-L-tHS-tHW-cWW

Number of instances in this motif group

18

Unit IDs

5OQL|1|1|C|1211
5OQL|1|1|G|1212
5OQL|1|1|U|1213
5OQL|1|1|A|1214
5OQL|1|1|G|1215
*
5OQL|1|1|U|1553
5OQL|1|1|C|1554
5OQL|1|1|A|1555
5OQL|1|1|G|1556
5OQL|1|1|G|1557

Current chains

Chain 1

35S rRNA

Nearby chains

Chain s

40S ribosomal protein S13-like protein

Chain w

40S ribosomal protein S22-like protein