IL_5OQL_063
3D structure
- PDB id
- 5OQL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 90S pre-ribosome from Chaetomium thermophilum
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CGGGG*CAAG
- Length
- 9 nucleotides
- Bulged bases
- 5OQL|1|1|G|1461
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5OQL_063 not in the Motif Atlas
- Homologous match to IL_4V88_431
- Geometric discrepancy: 0.2271
- The information below is about IL_4V88_431
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_67085.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 55
Unit IDs
5OQL|1|1|C|1459
5OQL|1|1|G|1460
5OQL|1|1|G|1461
5OQL|1|1|G|1462
5OQL|1|1|G|1463
*
5OQL|1|1|C|1535
5OQL|1|1|A|1536
5OQL|1|1|A|1537
5OQL|1|1|G|1538
Current chains
- Chain 1
- 35S rRNA
Nearby chains
- Chain g
- KRR1 small subunit processome component
- Chain l
- 40S ribosomal protein S1
- Chain s
- 40S ribosomal protein S13-like protein
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