IL_5OQL_071
3D structure
- PDB id
- 5OQL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 90S pre-ribosome from Chaetomium thermophilum
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- ACCA*UCCCU
- Length
- 9 nucleotides
- Bulged bases
- 5OQL|1|1|C|1742, 5OQL|1|1|C|1743
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5OQL_071 not in the Motif Atlas
- Homologous match to IL_4V88_443
- Geometric discrepancy: 0.1779
- The information below is about IL_4V88_443
- Detailed Annotation
- C-loop
- Broad Annotation
- No text annotation
- Motif group
- IL_63596.9
- Basepair signature
- cWW-cWS-cHS-L-cWW-tWH
- Number of instances in this motif group
- 15
Unit IDs
5OQL|1|1|A|1741
5OQL|1|1|C|1742
5OQL|1|1|C|1743
5OQL|1|1|A|1744
*
5OQL|1|1|U|2200
5OQL|1|1|C|2201
5OQL|1|1|C|2202
5OQL|1|1|C|2203
5OQL|1|1|U|2204
Current chains
- Chain 1
- 35S rRNA
Nearby chains
- Chain A
- Periodic tryptophan protein 2-like protein
- Chain I
- Utp12
- Chain b
- Putative U3 small nucleolar ribonucleoprotein
- Chain n
- 40S ribosomal protein s5-like protein
- Chain u
- 40S ribosomal protein S16-like protein
- Chain z
- 40S ribosomal protein S28-like protein
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