IL_5OT7_002

3D structure

PDB id

5OT7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongation factor G-ribosome complex captures in the absence of inhibitors.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUG*CGAC

Length

7 nucleotides

Bulged bases

5OT7|1|1|A|397

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5OT7_002 not in the Motif Atlas

Geometric match to IL_3TD0_005

Geometric discrepancy: 0.2581

The information below is about IL_3TD0_005

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_57744.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

5OT7|1|1|G|44
5OT7|1|1|U|45
5OT7|1|1|G|46
*
5OT7|1|1|C|395
5OT7|1|1|G|396
5OT7|1|1|A|397
5OT7|1|1|C|398

Current chains

Chain 1

16S Ribosomal RNA

Nearby chains

Chain O

30S ribosomal protein S16

Chain U

Elongation factor G