IL_5OT7_011

3D structure

PDB id

5OT7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongation factor G-ribosome complex captures in the absence of inhibitors.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

ACC*GGCU

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5OT7_011 not in the Motif Atlas

Geometric match to IL_4WSM_372

Geometric discrepancy: 0.3799

The information below is about IL_4WSM_372

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_16315.2

Basepair signature

cWW-cWW-L-cWW

Number of instances in this motif group

4

Unit IDs

5OT7|1|1|A|152
5OT7|1|1|C|153
5OT7|1|1|C|154
*
5OT7|1|1|G|167
5OT7|1|1|G|168
5OT7|1|1|C|169
5OT7|1|1|U|170

Current chains

Chain 1

16S Ribosomal RNA

Nearby chains

Chain S

30S ribosomal protein S20