IL_5OT7_022
3D structure
- PDB id
- 5OT7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Elongation factor G-ribosome complex captures in the absence of inhibitors.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- GUGCCAG*CGGUAAUAC
- Length
- 16 nucleotides
- Bulged bases
- 5OT7|1|1|A|532, 5OT7|1|1|U|534
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5OT7_022 not in the Motif Atlas
- Homologous match to IL_4LFB_021
- Geometric discrepancy: 0.4074
- The information below is about IL_4LFB_021
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_52042.1
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
5OT7|1|1|G|515
5OT7|1|1|U|516
5OT7|1|1|G|517
5OT7|1|1|C|518
5OT7|1|1|C|519
5OT7|1|1|A|520
5OT7|1|1|G|521
*
5OT7|1|1|C|528
5OT7|1|1|G|529
5OT7|1|1|G|530
5OT7|1|1|U|531
5OT7|1|1|A|532
5OT7|1|1|A|533
5OT7|1|1|U|534
5OT7|1|1|A|535
5OT7|1|1|C|536
Current chains
- Chain 1
- 16S Ribosomal RNA
Nearby chains
- Chain B
- 30S ribosomal protein S3
- Chain C
- 30S ribosomal protein S4
- Chain K
- 30S ribosomal protein S12
- Chain U
- Elongation factor G
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