IL_5OT7_058

3D structure

PDB id

5OT7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongation factor G-ribosome complex captures in the absence of inhibitors.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGGGAG*CAG

Length

9 nucleotides

Bulged bases

5OT7|1|1|G|1442|||A

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5OT7_058 not in the Motif Atlas

Homologous match to IL_4LFB_064

Geometric discrepancy: 0.3932

The information below is about IL_4LFB_064

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_34117.1

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

7

Unit IDs

5OT7|1|1|C|1440
5OT7|1|1|G|1441
5OT7|1|1|G|1442
5OT7|1|1|G|1442|||A
5OT7|1|1|A|1442|||B
5OT7|1|1|G|1443
*
5OT7|1|1|C|1459
5OT7|1|1|A|1460
5OT7|1|1|G|1461

Current chains

Chain 1

16S Ribosomal RNA

Nearby chains

Chain 4

Large subunit ribosomal RNA; LSU rRNA

Chain S

30S ribosomal protein S20

Chain u

50S ribosomal protein L19