IL_5OT7_071

3D structure

PDB id

5OT7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongation factor G-ribosome complex captures in the absence of inhibitors.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CAG*UGGG

Length

7 nucleotides

Bulged bases

5OT7|1|4|G|352

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5OT7_071 not in the Motif Atlas

Homologous match to IL_7RQB_012

Geometric discrepancy: 0.1707

The information below is about IL_7RQB_012

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_38958.7

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

15

Unit IDs

5OT7|1|4|C|288
5OT7|1|4|A|289
5OT7|1|4|G|290
*
5OT7|1|4|U|350
5OT7|1|4|G|351
5OT7|1|4|G|352
5OT7|1|4|G|353

Current chains

Chain 4

23S Ribosomal RNA

Nearby chains