IL_5OT7_075

3D structure

PDB id

5OT7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongation factor G-ribosome complex captures in the absence of inhibitors.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UUAAG*CGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5OT7_075 not in the Motif Atlas

Homologous match to IL_4WF9_019

Geometric discrepancy: 0.2169

The information below is about IL_4WF9_019

Detailed Annotation

AAA cross-strand stack

Broad Annotation

AAA cross-strand stack

Motif group

IL_66798.3

Basepair signature

cWW-L-R-L-R-tHS-cWW

Number of instances in this motif group

7

Unit IDs

5OT7|1|4|U|606
5OT7|1|4|U|607
5OT7|1|4|A|608
5OT7|1|4|A|609
5OT7|1|4|G|610
*
5OT7|1|4|C|618
5OT7|1|4|G|619
5OT7|1|4|G|620
5OT7|1|4|A|621
5OT7|1|4|G|622

Current chains

Chain 4

23S Ribosomal RNA

Nearby chains

Chain i

50S ribosomal protein L4

Chain q

50S ribosomal protein L15