IL_5OT7_077

3D structure

PDB id

5OT7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongation factor G-ribosome complex captures in the absence of inhibitors.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

5OT7|1|4|G|801, 5OT7|1|4|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5OT7_077 not in the Motif Atlas

Geometric match to IL_7A0S_015

Geometric discrepancy: 0.1585

The information below is about IL_7A0S_015

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_73855.1

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

10

Unit IDs

5OT7|1|4|G|674
5OT7|1|4|A|675
5OT7|1|4|A|676
5OT7|1|4|A|677
5OT7|1|4|C|678
*
5OT7|1|4|G|799
5OT7|1|4|A|800
5OT7|1|4|G|801
5OT7|1|4|A|802
5OT7|1|4|U|803
5OT7|1|4|A|804
5OT7|1|4|G|805
5OT7|1|4|C|806

Current chains

Chain 4

23S Ribosomal RNA

Nearby chains

Chain i

50S ribosomal protein L4

Chain q

50S ribosomal protein L15