IL_5OT7_087

3D structure

PDB id

5OT7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongation factor G-ribosome complex captures in the absence of inhibitors.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GA*UCC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5OT7_087 not in the Motif Atlas

Geometric match to IL_4V9F_034

Geometric discrepancy: 0.0995

The information below is about IL_4V9F_034

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_34520.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

61

Unit IDs

5OT7|1|4|G|862
5OT7|1|4|A|863
*
5OT7|1|4|U|913
5OT7|1|4|C|914
5OT7|1|4|C|915

Current chains

Chain 4

23S Ribosomal RNA

Nearby chains

Chain 5

5S ribosomal RNA; 5S rRNA

Chain 6

50S ribosomal protein L25

Chain r

50S ribosomal protein L16