IL_5OT7_108

3D structure

PDB id

5OT7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongation factor G-ribosome complex captures in the absence of inhibitors.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CUAAG*CGAAG

Length

10 nucleotides

Bulged bases

5OT7|1|4|A|1379

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5OT7_108 not in the Motif Atlas

Homologous match to IL_7RQB_052

Geometric discrepancy: 0.1744

The information below is about IL_7RQB_052

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_89002.2

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

20

Unit IDs

5OT7|1|4|C|1351
5OT7|1|4|U|1352
5OT7|1|4|A|1353
5OT7|1|4|A|1354
5OT7|1|4|G|1355
*
5OT7|1|4|C|1376
5OT7|1|4|G|1377
5OT7|1|4|A|1378
5OT7|1|4|A|1379
5OT7|1|4|G|1380

Current chains

Chain 4

23S Ribosomal RNA

Nearby chains

Chain c

50S ribosomal protein L34

Chain g

50S ribosomal protein L2