IL_5OT7_123

3D structure

PDB id

5OT7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongation factor G-ribosome complex captures in the absence of inhibitors.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GGAA*UC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5OT7_123 not in the Motif Atlas

Geometric match to IL_1G1X_001

Geometric discrepancy: 0.1249

The information below is about IL_1G1X_001

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

Major groove platform

Motif group

IL_50694.7

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

27

Unit IDs

5OT7|1|4|G|1666
5OT7|1|4|G|1667
5OT7|1|4|A|1668
5OT7|1|4|A|1669
*
5OT7|1|4|U|1993
5OT7|1|4|C|1994

Current chains

Chain 4

23S Ribosomal RNA

Nearby chains

Chain h

50S ribosomal protein L3

Chain p

50S ribosomal protein L14