IL_5OT7_127

3D structure

PDB id

5OT7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongation factor G-ribosome complex captures in the absence of inhibitors.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UGCGAAC*GGAGGUAUA

Length

16 nucleotides

Bulged bases

5OT7|1|4|G|1801, 5OT7|1|4|G|1816, 5OT7|1|4|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5OT7_127 not in the Motif Atlas

Homologous match to IL_7A0S_065

Geometric discrepancy: 0.1506

The information below is about IL_7A0S_065

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.6

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

5OT7|1|4|U|1798
5OT7|1|4|G|1799
5OT7|1|4|C|1800
5OT7|1|4|G|1801
5OT7|1|4|A|1802
5OT7|1|4|A|1803
5OT7|1|4|C|1804
*
5OT7|1|4|G|1813
5OT7|1|4|G|1814
5OT7|1|4|A|1815
5OT7|1|4|G|1816
5OT7|1|4|G|1817
5OT7|1|4|U|1818
5OT7|1|4|A|1819
5OT7|1|4|U|1820
5OT7|1|4|A|1821

Current chains

Chain 4

23S Ribosomal RNA

Nearby chains

Chain 1

Small subunit ribosomal RNA; SSU rRNA

Chain g

50S ribosomal protein L2