IL_5OT7_130

3D structure

PDB id

5OT7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongation factor G-ribosome complex captures in the absence of inhibitors.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GAAGG*CCC

Length

8 nucleotides

Bulged bases

5OT7|1|4|A|1847

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5OT7_130 not in the Motif Atlas

Geometric match to IL_7RQB_031

Geometric discrepancy: 0.3926

The information below is about IL_7RQB_031

Detailed Annotation

Minor groove platform with extra cWW

Broad Annotation

Minor groove platform

Motif group

IL_46796.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

6

Unit IDs

5OT7|1|4|G|1846
5OT7|1|4|A|1847
5OT7|1|4|A|1848
5OT7|1|4|G|1849
5OT7|1|4|G|1850
*
5OT7|1|4|C|1892
5OT7|1|4|C|1893
5OT7|1|4|C|1894

Current chains

Chain 4

23S Ribosomal RNA

Nearby chains

Chain 1

Small subunit ribosomal RNA; SSU rRNA

Chain 2

Transfer RNA; tRNA

Chain g

50S ribosomal protein L2