IL_5OT7_132

3D structure

PDB id

5OT7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongation factor G-ribosome complex captures in the absence of inhibitors.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GGGAG*CGAAC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5OT7_132 not in the Motif Atlas

Homologous match to IL_7RQB_075

Geometric discrepancy: 0.1893

The information below is about IL_7RQB_075

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_56467.8

Basepair signature

cWW-tSH-tSH-tHS-cWW

Number of instances in this motif group

29

Unit IDs

5OT7|1|4|G|1856
5OT7|1|4|G|1857
5OT7|1|4|G|1858
5OT7|1|4|A|1859
5OT7|1|4|G|1860
*
5OT7|1|4|C|1882
5OT7|1|4|G|1883
5OT7|1|4|A|1884
5OT7|1|4|A|1885
5OT7|1|4|C|1886

Current chains

Chain 4

23S Ribosomal RNA

Nearby chains

Chain 2

Transfer RNA; tRNA

Chain W

50S ribosomal protein L28

Chain f

50S ribosomal protein L1