IL_5OT7_160

3D structure

PDB id

5OT7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongation factor G-ribosome complex captures in the absence of inhibitors.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UUGAG*CAAGAUGAG

Length

14 nucleotides

Bulged bases

5OT7|1|4|G|2780

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5OT7_160 not in the Motif Atlas

Geometric match to IL_7RQB_102

Geometric discrepancy: 0.1374

The information below is about IL_7RQB_102

Detailed Annotation

tSH-tHS-tHW

Broad Annotation

tSH-tHS-tHW

Motif group

IL_04638.1

Basepair signature

cWW-tSH-tHW-tHS-cSH-cWW-L

Number of instances in this motif group

5

Unit IDs

5OT7|1|4|U|2636
5OT7|1|4|U|2637
5OT7|1|4|G|2638
5OT7|1|4|A|2639
5OT7|1|4|G|2640
*
5OT7|1|4|C|2774
5OT7|1|4|A|2775
5OT7|1|4|A|2776
5OT7|1|4|G|2777
5OT7|1|4|A|2778
5OT7|1|4|U|2779
5OT7|1|4|G|2780
5OT7|1|4|A|2781
5OT7|1|4|G|2782

Current chains

Chain 4

23S Ribosomal RNA

Nearby chains

Chain h

50S ribosomal protein L3

Chain o

50S ribosomal protein L13